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Year : 2009  |  Volume : 27  |  Issue : 2  |  Page : 97-99

Laboratory microbiology to clinical microbiology: Are we ready for a transition?

HPA West Midlands Public Health Laboratory, Birmingham Heartlands Hospital, Bordesley Green East, Birmingham B9 5SS, United Kingdom

Date of Submission09-Feb-2009
Date of Acceptance06-Mar-2009

Correspondence Address:
Sanjay Bhattacharya
HPA West Midlands Public Health Laboratory, Birmingham Heartlands Hospital, Bordesley Green East, Birmingham B9 5SS
United Kingdom
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Source of Support: None, Conflict of Interest: None

DOI: 10.4103/0255-0857.49422

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How to cite this article:
Bhattacharya S. Laboratory microbiology to clinical microbiology: Are we ready for a transition?. Indian J Med Microbiol 2009;27:97-9

How to cite this URL:
Bhattacharya S. Laboratory microbiology to clinical microbiology: Are we ready for a transition?. Indian J Med Microbiol [serial online] 2009 [cited 2021 Jan 21];27:97-9. Available from:

Infection is and continues to be, along with environmental pollution, a top public health challenge in India. Traditionally, infectious diseases at the community as well as at the institutional level have been managed by clinical professionals and specialties. The role of microbiologists had been largely confined within the premises of the laboratory, dealing more often with the science than with the application and interpretation of the results emanating from it. Microbiologists within that role played a pre-eminent part in consolidating the foundations of this branch of laboratory medicine and, in the process, striving to produce quality information and personnel dedicated to the service of patients and infectious diseases. However, this model of service provision has not always been very beneficial for the clinicians or the patients. This has resulted in laboratories being somewhat out of touch with clinical realities. A few specific examples include carrying out tests, which are either unnecessary (e.g., speciation or susceptibility testing of Gram negative bacteria colonising chronic ulcers) or outdated (Paul-Bunnell test for Epstein-Barr virus infection) or inadequate (hepatitis B surface antigen "positive" without a neutralisation test). This may also manifest as failure to recognise the urgency of certain results or to recognise the need for development of new tests or testing strategies (viral loads for human immunodeficiency virus/hepatitis B virus/hepatitis C virus). As a result, a lot of resources (capital equipments, consumables, manpower) are either underutilised or inappropriately utilised, leaving a gap between clinical/patient expectation and laboratory performance. Although there are several notable exceptions of individuals/institutions who/which are doing an exemplary job under difficult circumstances, we are likely to achieve more by reorganising our service delivery model.

The laboratory-centred model for microbiologists has been the standard model for a long period of time not only in India but also in many other countries, including those in the industrialised world. However, with the development of India as an emerging economy and the aspiration for high quality and equitable development, there is an increasing need of multidisciplinary work within Infection Management. In this model of multispecialty coordination, the clinical microbiologist is seen as a key interface between clinical and laboratory sciences. A notable and perhaps pioneering example of this model is the United Kingdom, [1] where microbiologists and haematologists had made a successful transition from the laboratory-centred role to a clinical/laboratory interface and clinical leadership role about a generation ago. The objective of this article is to appraise the applicability of this clinical microbiology model to the Indian context.

To begin with, clinical microbiology does not diminish or disempower laboratory microbiology; rather, it enhances it. The key concepts of high quality, consistent standards, business planning, education and training besides health and safety considerations, which are central to an effective laboratory microbiology service, are also at the heart of clinical microbiology. However, what is manifestly different in the two models is the emphasis on clinical liaison (constituting regular and pro-active clinical communication and consultation), which is a logical extension to the doctrine of shared responsibility of patient care. In practical terms, this means that microbiologists go on regular ward rounds (intensive care units and infection-related units) on a routine or reactive basis (for positive blood culture or infection control interventions for example). Clinical microbiologists therefore become an essential part of clinical care with regards to preventative, diagnostic or therapeutic service. Participating and contributing in multidisciplinary meetings, hence, becomes an integral part of the microbiologists' job description. [2] This approach, besides giving greater visibility and clinical responsibility to the microbiologists both in the hospital and in the community setting, brings out the specialty face to face with "realities and challenges of clinical medicine". Concepts such as quality, clinical relevance of diagnostic tests and optimal utilisation of sparse resources can then be directly seen to be tested by clinical peers and patients. In addition, this would give clinicians the direct feedback about the strengths, limitations and nuances of test results and, importantly, the degree and the complexity of antibiotic resistance. In a recent study from three Indian centres, 95 of 130 (73%) third-generation cephalosporin-resistant isolates were found to carry the bla (CTX-M-15) type extended spectrum β-lactamase.[3] In this context, the transition of a microbiologist from  Petri dish More Details to the patient is becoming more of a matter of clinical necessity rather than one of clinical curiosity. [4] Interestingly, a survey of 285 general practitioners and medical specialists in southern India revealed that improved knowledge and awareness (16%) and guidelines along with continuing medical education (12%) were felt to be factors that might help promote more prudent use of antibiotics. [5] In another survey of laboratory users in the UK about perceptions of microbiology service, a significant proportion of hospital doctors and general practitioners felt that regular update meetings from microbiology, including updates on antibiotic sensitivities and antibiotic guidelines would be helpful. In that same study, 44% of the hospital doctors wanted greater clinical involvement from microbiologists. [6]

It would perhaps be unrealistic and naοve to expect in a transitional economy like India (with resource limitations in capital equipments, suitably trained human resources and restricted availability of appropriate training facilities) to even consider a full-scale transition from a laboratory-centred model to a clinical leadership model. Clinical microbiology needs a strong technical support base, with the requirement of an appropriately skilled and suitably trained group of biomedical scientists (laboratory technical staff) who are able to take decisions without direct supervision with regards to routine diagnostics within the framework of laboratory safety, standards and quality. They are also essential for service development, diagnostic evaluation and validation of techniques. Until we are able to achieve a reasonable supply of suitably qualified medical laboratory technologists, regular supervision of daily bench work by laboratory microbiologists would be essential. It would perhaps be appropriate to explore this exciting new way of working in microbiology with hope as well as caution, where part of the existing workforce of laboratory microbiologists are enabled and empowered to undertake clinical responsibilities and clinical interface roles. However, this can only happen after a period of appropriate training for the role of clinical microbiologists and virologists. [7]

In an editorial in IJMM in 2003 on the topic of Microbiology curriculum for medical students in India, the current editor of this journal suggested the need for patient-oriented subject content rather than organism-targeted reading material. [8] However, considering the enormous diversity inherent in the post-graduate Medical Microbiology training courses in India, achieving any sort of agreement or uniformity in curriculum, training or examination would be challenging to say the least. [9] The total annual number of MD Microbiology seats in India is 311. This is available from 126 medical colleges located in 22 states or union territories (range 1-10 seats per institution per year; median 2). Only about 54% of these institutions are owned/run by the government. [10] However, compared with the enormity of challenges we face from infectious diseases in the country, microbiology seems to be an under-represented specialty. For every 100 medical students in India there seems to be only one MD Microbiology course available every year (311/31,298 medical students per year). [10]

In conclusion, the key performance indicators for microbiology doctors need to go beyond academic achievements into the realm of clinical outcomes and proper resource utilisation (anti-infective and diagnostics), number of lives saved or infections reduced. However, we must not lose sight of the fact that external quality assurance and accreditation of clinical laboratories remains one of the biggest challenges faced by the microbiologists in India. From virtually none when accreditation was first started in 1999, the number of accredited medical labs in India rose to 47 by June 2005. By the middle of February 2009 some 98 laboratories performing serological testing in microbiology had been accredited by the National Accreditation Board for Testing and Calibration Laboratories (NABL). However, this represents a tiny fraction of the 20,000 odd medical laboratories that are estimated to be present in the country. [11],[12] The external quality assessment service (EQAS) instituted under the aegis of the India Association of Medical Microbiology in 1993 reported in 2001 that only 70 laboratories, including 54 from private hospitals and only 18 from medical colleges (government or private), were participants in the voluntary EQAS. [13] Laboratory-based microbiologists and virologists are key to improving the situation and providing leadership in total quality management. [14] Clinical microbiology as a philosophy dares to close the unhelpful gap between basic medical science and clinical care. Notwithstanding the angst it may generate (within the clinical or microbiological community), it is a model worth exploring. Using it effectively without compromising on our existing core assets of scientific understanding and technical expertise could be a resource-enhancing and educative experience for all concerned besides providing the people with the infection service they deserve. It is not a call for blind imitation but of rational analysis and adaptation.

 ~ References Top

1.McKendrick M. Clinical infection services-the UK perspective. Clin Microbiol Infect 2000;6:419-22.  Back to cited text no. 1  [PUBMED]  [FULLTEXT]
2.The Royal College of Pathologist. Specimen job description: Consultant medical microbiologist. April 2005.  Back to cited text no. 2    
3.Ensor VM, Shahid M, Evans JT, Hawkey PM. Occurrence, prevalence and genetic environment of CTX-M beta-lactamases in Enterobacteriaceae from Indian hospitals. J Antimicrob Chemother 2006;58:1260-3.  Back to cited text no. 3  [PUBMED]  
4.Bhattacharya S. ESBL - from petri dish to the patient. Indian J Med Microbiol 2006;24:20-4.  Back to cited text no. 4  [PUBMED]  Medknow Journal
5.Sivagnanam G, Thirumalaikolundusubramanian P, Mohanasundaram J, Anusha Raaj A, Namasivayam K, Rajaram S. A Survey on current attitude of practicing physicians upon usage of antimicrobial agents in southern part of India. Medscape Gen Med 2004;6:1.  Back to cited text no. 5    
6.Morgan MS. Perceptions of a medical microbiology service: a survey of laboratory users. J Clin Pathol 1995;48:915-8.  Back to cited text no. 6  [PUBMED]  [FULLTEXT]
7.The Royal College of Pathologist. Curriculum for specialty training in medical microbiology and virology. January 2007.   Back to cited text no. 7    
8.Kanungo R. Microbiology curriculum for MBBS: Is there a need for change? Indian J Med Microbiol 2003;21:5.   Back to cited text no. 8  [PUBMED]  Medknow Journal
9.Rao RS, Lalitha MK, Narang P. Curriculum designing for post graduates in medical microbiology. Indian J Med Microbiol 1999;17:116-24.   Back to cited text no. 9    
10.Medical Council of India. Available from: [last accessed on 2009 Jan 31].  Back to cited text no. 10    
11.Directory of accredited medical testing laboratories (as on 30 June 2005). New Delhi, National Accreditation Board for Testing and Calibration Laboratories; Department of Science and Technology, Government of India, 2005  Back to cited text no. 11    
12.National Accreditation Board for Testing and Calibration Laboratories; Department of Science and Technology, Government of India. Available from: [last accessed on 2009 Feb 19].  Back to cited text no. 12    
13.Jesudason MV, Mukundan U, Ohri VC, Badrinath S, Jacob John T. An external quality assessment service in Microbiology in India: A six-year experience. Indian J Med Microbiol 2001;19:20-5.   Back to cited text no. 13    
14.Tibbets MW, Gomez R, Kannangai R, Sridharan G. Total quality management in clinical virology laboratories. Indian J Med Microbiol 2006;24:258-62.  Back to cited text no. 14  [PUBMED]  Medknow Journal

This article has been cited by
1 Clinical microbiology: Should microbiology be a clinical or a laboratory speciality
Bhattacharya, S.
Indian Journal of Pathology and Microbiology. 2010; 53(2): 217-221
2 Laboratory microbiology to clinical microbiology: Are we ready for a transition
Kapila, K., Kaushik, K.
Indian Journal of Medical Microbiology. 2009; 27(4): 378-379


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